PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34573
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 279aa    MW: 32032.6 Da    PI: 9.3013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34573genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-082569345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+eE +++  a + +      +W ++a  ++ g+t +++   + 
         OIT34573 25 EWTQEENKKFESALAIYDETtpnRWFKVADLIP-GKTVYDVMKQYK 69
                     7*****************99*************.*******98876 PP
2Myb_DNA-binding40.65.7e-13129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
         OIT34573 129 PWTEEEHRRFLMGLDKHGKGDWRNISRNFVISKTPTQVASHAQKY 173
                      8*****************************789***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
METLSPTSLI PNSSWMMMEQ RKSSEWTQEE NKKFESALAI YDETTPNRWF KVADLIPGKT  60
VYDVMKQYKE LAADVSDIEA GLFPVPRTYF ASSFMLDLVD DHHYHHHRGV QAFRKRGRSS  120
DQERKKGVPW TEEEHRRFLM GLDKHGKGDW RNISRNFVIS KTPTQVASHA QKYYLRQLSG  180
GKDKRRPSIH DITTVNLTNI DLSDNNLNNN NNNNKSLSSF AVNIPFQNSN DGALMAFGSS  240
YNSSSYTYEL GSVLSRGRYG TDNISANDNS QIQRYQIWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114126RKRGRSSDQERKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-82MYB family protein