PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34592

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 248aa MW: 28157.3 Da PI: 8.2653

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34592	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C k F+++ L H++ H OIT34592 89 YECQYCFKNFPTSQALGGHQNAH 111 99******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MDKTEREALE FMNVESFSQL TPFIRPPPPP PPVKEKPIRL FGKEFGGGSN ATTTTDMSES 60 IDSNPFHDEP ETNTVNPANY AYKESQRKYE CQYCFKNFPT SQALGGHQNA HKRERQDAKR 120 AHLQSALAHG KIILSIYGIM NHHRLGEPAT PSTTRHSTWN NINNSTRFYG NHHVNNVISP 180 YSQTPINRNP LAFWRIPSAV HQNSSSNLGF PNDDLKPFPM VKSPNYDSRF EYEPKGGVQD 240 HLSLDLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	8e-34	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT34592