PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34706
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 26734.6 Da    PI: 5.5652
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34706genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.5e-27959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              k+i+n + rqvtfskRr g++KKA ELSvLCda va+iifs tgkl++y+s
  OIT34706  9 KKIDNITARQVTFSKRRRGLFKKAAELSVLCDAHVALIIFSATGKLFDYAS 59
              68***********************************************86 PP
2K-box43.81.1e-15941712299
     K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
               +kL ke+    re+R+++Ge+Le Lsl+ Lqq+e++Le +l+++ + K   ++++i +lq+k  el eenk+L++k++
  OIT34706  94 TKLSKELADKNRELRQMKGEELEGLSLEKLQQIEKRLEAGLTRVLEIKGTKITDEITKLQRKGAELMEENKQLKQKMA 171
               688888888899***************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAAELSVLCD AHVALIIFSA TGKLFDYASS  60
SMEDILGKYK LNSTSLDKDD QPSLELQLEN SLNTKLSKEL ADKNRELRQM KGEELEGLSL  120
EKLQQIEKRL EAGLTRVLEI KGTKITDEIT KLQRKGAELM EENKQLKQKM AMMNEGKLDC  180
MVMEEGQSSD QSITTNVSNS GPPPEDDCSN ASLKLGCNNG PPIEDDCSDT YLKLGLPFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-76MIKC_MADS family protein