PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34768
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 255aa    MW: 28853.5 Da    PI: 5.2135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34768genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.9e-08153200455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  OIT34768 153 SHSLAERVRRGKINEKLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 200
               8*************************8....35599999********99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MADHFINSSF SLFNIDSSMD FMNQFPEIIN PCSSELSSFN LQSSMEFSHE NIFTQVAEFP  60
GNLQEYFQEN IQQDDKINAS VIPCDMVPIN ESKKRKTIDT PESSSSPAVS ATGTERRSSK  120
GRGNRVKSSD EKEEEKTKEV VHVRAKRGQA TDSHSLAERV RRGKINEKLR CLQDIVPGCY  180
KTMGMAGMLD EIINYVQSLQ NQVEFLSMKL TAASYNYDFN SESDILVSMQ RAEALEALKM  240
QKSKFPPFPL LPYNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.12e-58bHLH family protein