PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34958
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 260aa    MW: 29284.9 Da    PI: 7.7703
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34958genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19192226135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  OIT34958 192 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 226
               *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MNMVEALDST TCFMVDDDIL NFSLDEEKHP SISSSSSFSS LDSSTNVSFL PDDHSRSFSE  60
SVEEELEWLS NKDAFPAVEF DIFSENVPNI IFDHHSPVSV LENGSSISTN NNSCNINDKE  120
NAFMIGCGSL QVPVNYPVRA RGKRRRRISF ADLTNEHCVW GRKLKIKNNK QEWELLSLPM  180
TTAKRASIGR RCQHCGVDKT PQWRAGPMGP KTLCNACGVR YKSGRLLPEY RPANSPTFSA  240
NLHSNSHRKV LEMRKQRIGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148KRRRRI
2143167KRRRRISFADLTNEHCVWGRKLKIK
3144165RRRRISFADLTNEHCVWGRKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-42GATA family protein