PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34985
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19253.7 Da    PI: 10.11
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34985genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.89.1e-161258248
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
              +i  ++ r vtfskRr+g++KKA EL  +++ +va ++fs+tg+ y+
  OIT34985 12 KITKETSRMVTFSKRRKGLFKKAGELESMTGSRVAAVVFSPTGRPYT 58
              688999*************************************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MGTGKKKIQI EKITKETSRM VTFSKRRKGL FKKAGELESM TGSRVAAVVF SPTGRPYTCG  60
NVTSAIERHF SSFSEPSSSG LNSRDSNSDE VSGSSSGSRS SSPPRNSLRD WLEDIDVEQC  120
QNLNQLLMLK EQLEGTREKL VSEDSECFQA LFMKGRLNKT RDLKLNFNKS NSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-12M-type_MADS family protein