PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34999
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 581aa    MW: 63855 Da    PI: 4.6864
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34999genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.61e-1372135781374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               lv++L++cAea+++++++la+alL+++  la +++ +m+++a+yf+eALa++++r    ly    ps+ ++   ++ l++   f+e++P+lkf+h+taNqa
  OIT34999 213 LVHTLMACAEAIQQEKMKLAEALLKQIGFLAVSQAGAMRKVATYFAEALARKVYR----LY----PSNPNDPAFTDLLQM--HFYETCPYLKFAHFTANQA 303
               689****************************************************....44....444443334555444..5****************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               Ilea++++++vH+iDf+++qG+QWpaLlqaLa Rp+g+p++R+Tg+g+p++++++ l+++g++La++Ae+++v+fef+ +va++l+dl+ +++++++gE++
  OIT34999 304 ILEAFANKNKVHVIDFSMKQGMQWPALLQALALRPGGAPTFRLTGIGPPSQDNTDHLQQVGWKLAQLAESINVEFEFRGFVANTLADLDASMFDIREGETV 404
               ***************************************************************************************************** PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpreseerikvErellgreivnvv 298
               aVn++++lh ll++++ +e+    vL++vk+l+P+++++veqea+hn++ F++rf+e+l+yys+lfdsle       l++ s++++ +++++lgr+i+n+v
  OIT34999 405 AVNSMFELHPLLARPGGIEK----VLSFVKDLKPEIFTIVEQEANHNGPVFMDRFTESLHYYSTLFDSLEGCggggeLGPVSDQDKLMSEVYLGRQICNLV 501
               *******************9....*********************************************8766777799999******************* PP

      GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +ceg +r+erhetl +Wr r+++aGF+pv+l+++a kqa++ll+ ++ + gyrvee++g+l+lgW++rpL+++SaW+
  OIT34999 502 SCEGVDRVERHETLTQWRTRFNSAGFEPVHLGSNAFKQASMLLALFAgGGGYRVEENNGCLMLGWHTRPLIATSAWK 578
               ***********************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    
MKRDQTMPYE QLEDSFSGGC SSAAGGGGCS GKGKMWEEDG GVDDELLAVL GYKVKASDMA  60
EVAQKLEQLE EVMGSVEQEN LSFLASETVH YNPSDLSSWL ESMISELNPP EPFSNSSSSF  120
TTNQVYEDSS SFDSDLTAIP GKAVFPQMEN PAHELQVQQP QSKRFKPTTT TELSPSSSSS  180
ISVGGGMWRS FQSESVSTRP VVIVDSQDNG VRLVHTLMAC AEAIQQEKMK LAEALLKQIG  240
FLAVSQAGAM RKVATYFAEA LARKVYRLYP SNPNDPAFTD LLQMHFYETC PYLKFAHFTA  300
NQAILEAFAN KNKVHVIDFS MKQGMQWPAL LQALALRPGG APTFRLTGIG PPSQDNTDHL  360
QQVGWKLAQL AESINVEFEF RGFVANTLAD LDASMFDIRE GETVAVNSMF ELHPLLARPG  420
GIEKVLSFVK DLKPEIFTIV EQEANHNGPV FMDRFTESLH YYSTLFDSLE GCGGGGELGP  480
VSDQDKLMSE VYLGRQICNL VSCEGVDRVE RHETLTQWRT RFNSAGFEPV HLGSNAFKQA  540
SMLLALFAGG GGYRVEENNG CLMLGWHTRP LIATSAWKLS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein