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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT35000 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | GRAS | ||||||||
| Protein Properties | Length: 530aa MW: 58987.2 Da PI: 6.398 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 377.4 | 1.8e-115 | 157 | 529 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svsel..ykalppsetseknsseelaalklfsevsPilkfshlta 98
lv+lL++cAeav+ +d+++a+ lL++l+ a g+++qR+a++f+++La rla + ++ y a p+ +++++ +++ al l++e++P ++f+h++a
OIT35000 157 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFVQGLADRLALvQPLGTvgYCATPAMNKTDMALEKKEEALGLLYEICPHFQFGHFVA 257
689*************************************************9983222331144445555555558888899999*************** PP
GRAS 99 NqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
N Ilea+ege+ +H++D+++s +G QW L+q+L++Rp++pp +lRiT+vg+ + e+ + +g+ L+ +A++lg+++ef++ v+++le+l+++++
OIT35000 258 NCSILEAFEGESLIHVVDLGMSvglpHGHQWRRLIQSLTNRPGQPPrRLRITAVGE----NIEKFQIIGDELEAYARSLGINLEFSA-VESNLENLKPKDI 353
*******************9884444678*************877779********....99*************************.79*********** PP
GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
+v gE+l+Vn++lqlh +++es + +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl++ lp+ + r+k+E++++++ei+
OIT35000 354 KVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTRRAKIEQFYFAEEIK 451
********************88877777...8********************************************************************* PP
GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
n+v+ceg +r+erhe++ +Wr+r+++aGF+++p k+++qak l+kv+ +g+++ ee+g+lvlgWk++p+v++S+W+
OIT35000 452 NIVSCEGPARVERHERVDQWRRRMSRAGFQAAPT--KMVSQAKQWLAKVNaYEGFTITEEKGCLVLGWKSKPIVAASCWK 529
*******************************996..689****************************************8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 530 aa Download sequence |
MTYDMVTGFL SLEPFNGDQI GYDPLVNGLY LSHKELAYSL NPYTAVFKRN AASIVSTLSD 60 ESGDFKRLRR TPSVGESLGS NSISFYSDSS SSSSGGGSSI PRNDSTNSVN SLHFAPRLHF 120 RDHVWALNQR YLAAEAIEEA AADIINQEEE NEEGMKLVQL LITCAEAVAC RDKSRASVLL 180 SELRASALVF GTSFQRVASC FVQGLADRLA LVQPLGTVGY CATPAMNKTD MALEKKEEAL 240 GLLYEICPHF QFGHFVANCS ILEAFEGESL IHVVDLGMSV GLPHGHQWRR LIQSLTNRPG 300 QPPRRLRITA VGENIEKFQI IGDELEAYAR SLGINLEFSA VESNLENLKP KDIKVYDGEV 360 LVVNSILQLH CVVKESRGAL NSVLQVVHEL SPKILVLVEQ DSSHNGPFFL GRFMEALHYY 420 SAIFDSLDVM LPKYDTRRAK IEQFYFAEEI KNIVSCEGPA RVERHERVDQ WRRRMSRAGF 480 QAAPTKMVSQ AKQWLAKVNA YEGFTITEEK GCLVLGWKSK PIVAASCWKC |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G14920.1 | 6e-76 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT35000 |




