PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35146
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18675.6 Da    PI: 10.221
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35146genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-201656242
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+f +
  OIT35146 16 KIENQNNRQVTFSKRRNGVFKKANELAVMTGAEVGIIVFPP 56
              79************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MSTRLIKGRK SVHLAKIENQ NNRQVTFSKR RNGVFKKANE LAVMTGAEVG IIVFPPERPP  60
SPSSPGIDDK YVQMFRKANC MTLNTQLNTL KDQLYLSLNL KSKLKEKNKN LESQQEWFRG  120
PIEKMNYTEA SMLKEGLEDL LLKVKNYGTE CGFGYENGKW KAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-16M-type_MADS family protein