PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35147
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21183.1 Da    PI: 10.1331
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35147genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.22.4e-191656242
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              rien++nrqvtfskRrn ++KKA+EL ++++aev +i+  +
  OIT35147 16 RIENQTNRQVTFSKRRNSVFKKANELATMTGAEVGIIVCPQ 56
              9************************************9755 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MSTRLIKGRK GVRLARIENQ TNRQVTFSKR RNSVFKKANE LATMTGAEVG IIVCPQGSKP  60
YSFGHPNINE TINKYVGEER PPSPSSPGID DKYVQMFRKA NSSELNIRLN SLQDQLDFEL  120
NLRSKLKQMN KSAENQQEWF KGPIEKMNYT EASMLKEGLE DLLLKVKNYG TERGYGYENG  180
KWKAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-28M-type_MADS family protein