PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35168

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 25608.9 Da PI: 5.0862

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35168	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.4e-20	55	107	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k OIT35168 55 KRKLSEEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWK 107 45899***********************************************9 PP
2	HD-ZIP_I/II	120.2	1.1e-38	54	145	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ +++rLe+ev +L+e+l+e OIT35168 54 RKRKLSEEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKSKKLEEEYTKLKTEHDTNIVDKCRLENEVLKLKEQLSE 145 8****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MIMSSSMNLQ VDDQMVLISQ YYPGIYTQEL PEQGEVKPRR RRKKNKGESS WIMRKRKLSE 60 EQVNLLEQSF GNEHKLESER KDKLASELGL DPRQVAVWFQ NRRARWKSKK LEEEYTKLKT 120 EHDTNIVDKC RLENEVLKLK EQLSEAENEI QRLLMERCDG VNSSNSPTTS SLSMEAANME 180 TPFLGDFGME GFDNTFYVPQ NTYSQGLEWV NLYMPYDM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	57	RRRRKKNKGESSWIMRKRK
2	40	58	RRRRKKNKGESSWIMRKRK
3	41	59	RRRRKKNKGESSWIMRKRK
4	42	60	RRRRKKNKGESSWIMRKRK
5	54	83	RKRKLSEEQVNLLEQSFGNEHKLESERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-68	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT35168