PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35195
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 218aa    MW: 23842.9 Da    PI: 8.4687
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35195genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.94e-3981081100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+a+l ++k++
  OIT35195   8 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIKDPVYGCVAHIFALQQQVAYLQAQLMQVKAQ 108
               7*************************99*******************************************************************999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MASGTGSPCG ACKFLRRKCA SDCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVA  60
DRCEAVVTIA YEAQARIKDP VYGCVAHIFA LQQQVAYLQA QLMQVKAQAA QSLINNSRNS  120
ENTYPQWPNN MAASVGLMAS SFPANNNNNP TYTMNSNSSP QSSLESIDHY SDGVNVQEIQ  180
SRSDQVFYQA AYTNSSRKRP SQTELGELQA LALRMMKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-61LBD family protein