PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35199

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 346aa MW: 39214.2 Da PI: 8.3967

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35199	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl OIT35199 14 KGPWTPEEDQKLLSCIEEHGCGSWRALPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.6	3.7e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+ +++++++lG++ W++Ia++++ Rt++++k++w++ OIT35199 67 RGKFSLQEERTIIQLHALLGNR-WSAIAAYLP-SRTDNEIKNYWNS 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRSKCCDKE GLKKGPWTPE EDQKLLSCIE EHGCGSWRAL PAKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEERTIIQ LHALLGNRWS AIAAYLPSRT DNEIKNYWNS RLKKRLTKMG 120 IDPMTHKPKI TNNINGSSND QSKYVANLSH MAEWESARLE AEARLVRRSK DHSKFLFNNT 180 RNNNNNNYVV SQPYYQLPCL DILKAWQRAS TKLPTTNDIS SILLDGFANK NLESSIPSTL 240 NSSENLLMNN NVPNTTKVGD QNLPLSTITC LENPCPTKDV QTDLPSFIEE FSELFDPEYT 300 QNSANNFTGV QMDNFLGSCS GDFEDNKFNS NNFPYLVTSP IGSPVF

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRSKCCDKE GLKKGPWTPE EDQKLLSCIE EHGCGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEERTIIQ LHALLGNRWS AIAAYLPSRT DNEIKNYWNS RLKKRLTKMG  120
IDPMTHKPKI TNNINGSSND QSKYVANLSH MAEWESARLE AEARLVRRSK DHSKFLFNNT  180
RNNNNNNYVV SQPYYQLPCL DILKAWQRAS TKLPTTNDIS SILLDGFANK NLESSIPSTL  240
NSSENLLMNN NVPNTTKVGD QNLPLSTITC LENPCPTKDV QTDLPSFIEE FSELFDPEYT  300
QNSANNFTGV QMDNFLGSCS GDFEDNKFNS NNFPYLVTSP IGSPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-81	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT35199