PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35207

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 455aa MW: 49675.4 Da PI: 8.2663

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35207	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123.8	7.2e-39	176	253	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC+ dls+ak+yhr+h+vC+ hsk+p+v++ g e+rfCqqCsrfh+ls+fDe+krsCrrrL++hn+rrrk+q+ OIT35207 176 RCLVEGCNLDLSSAKKYHRKHHVCHSHSKCPKVIIGGAERRFCQQCSRFHSLSDFDEKKRSCRRRLSDHNARRRKPQQ 253 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MEWNVKWDWG DLMMFSSEIC GSPKELQLTD WGVDEEGEVD RRSFNLSGFG GSVGGYGSDM 60 GRSSSIKSSI SASTDSSPNE TLKASSFTFE ASNGSQGNLG KDVEQCRDEL YRCSPPMEAL 120 IGYDGPLTGL ELGKRTVESN SGGISVKLPS SSTIPVSSVS AAKKKKSSSQ NALIPRCLVE 180 GCNLDLSSAK KYHRKHHVCH SHSKCPKVII GGAERRFCQQ CSRFHSLSDF DEKKRSCRRR 240 LSDHNARRRK PQQETIQFNS TRLSSWFYDN SKSMNFVFNN GLLLQSKTTA DSTWGTSEVP 300 KFTITRELTS KPYKAGSINV QSLVGGIKLP GATNIQTNAS KGTTTDVFSQ GVKEDMFSPN 360 MGAAPELPRA LSLLSNKSSS EPESTSIGHP THVNQISITE QAIPENSPLG STEHWQAEQY 420 LLNPGIHALV ANGHSGGSFQ LSKDPFVNFY FNGLN

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MEWNVKWDWG DLMMFSSEIC GSPKELQLTD WGVDEEGEVD RRSFNLSGFG GSVGGYGSDM  60
GRSSSIKSSI SASTDSSPNE TLKASSFTFE ASNGSQGNLG KDVEQCRDEL YRCSPPMEAL  120
IGYDGPLTGL ELGKRTVESN SGGISVKLPS SSTIPVSSVS AAKKKKSSSQ NALIPRCLVE  180
GCNLDLSSAK KYHRKHHVCH SHSKCPKVII GGAERRFCQQ CSRFHSLSDF DEKKRSCRRR  240
LSDHNARRRK PQQETIQFNS TRLSSWFYDN SKSMNFVFNN GLLLQSKTTA DSTWGTSEVP  300
KFTITRELTS KPYKAGSINV QSLVGGIKLP GATNIQTNAS KGTTTDVFSQ GVKEDMFSPN  360
MGAAPELPRA LSLLSNKSSS EPESTSIGHP THVNQISITE QAIPENSPLG STEHWQAEQY  420
LLNPGIHALV ANGHSGGSFQ LSKDPFVNFY FNGLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	250	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	5e-48	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT35207