PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35215
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 293aa    MW: 30681.9 Da    PI: 9.811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35215genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-063659225
              -S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
              k ++C  f+ t  C++G++C+F H
  OIT35215 36 KSKPCTKFFSTAGCPFGENCHFLH 59
              7789******************** PP
2zf-CCCH29.81e-0997122227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               kt+lC+ +     Ck+Gd+C+FaHg+
  OIT35215  97 KTKLCNKYNTAEGCKFGDKCNFAHGE 122
               8***********************96 PP
3zf-CCCH375.8e-12260284126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt+lC +fa+ G C +GdrC+FaHg
  OIT35215 260 FKTKLCENFAK-GSCTFGDRCHFAHG 284
               69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MDNRKRNRND AGANVNGGVK KYKPEMDSLS SGIGSKSKPC TKFFSTAGCP FGENCHFLHY  60
VPGGYNAVAQ MMKMVPALSS RNTAAPPMSN GNASSVKTKL CNKYNTAEGC KFGDKCNFAH  120
GEWEIGKPIM PSQEDPRAMG VGPVPGRFGG RIEPAVSGPA ASFGTSATAK ISVDASLAGA  180
IIGKGGVHSK QICRQTGAKL AIRDHETDKN LRNIELEGTF EQISQASAMV RELINSLGSV  240
GGPGRTPAIP GGAAPPGSNF KTKLCENFAK GSCTFGDRCH FAHGAAELRK TGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-61C3H family protein