PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35343

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 477aa MW: 52992.5 Da PI: 4.9356

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35343	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk+ G g+W+++ r g+ R++k+c++rw ++l OIT35343 22 KGPWTATEDAILMEYVKKNGEGNWNAVQRNSGLMRCGKSCRLRWANHL 69 79******************************************9986 PP
2	Myb_DNA-binding	51.5	2.4e-16	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++ eE+ l+v+++++lG++ W++ a+ m+ gRt++++k++w++ OIT35343 75 KGAFSLEEERLIVELHAKLGNK-WARMAAQMP-GRTDNEIKNYWNT 118 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MAPDGGGLKA RNNGGTRQVL KKGPWTATED AILMEYVKKN GEGNWNAVQR NSGLMRCGKS 60 CRLRWANHLR PNLKKGAFSL EEERLIVELH AKLGNKWARM AAQMPGRTDN EIKNYWNTRL 120 KRRQRAGLPI YPQDIQPQLN QQENQLQHST IPSPFDNNPQ NSNYVNNPPL SLLDIFNPST 180 MKPSMSDQYQ FNNPSPYLTT TNNNNKLKLF RDPRVSLSLT LASSIRNSQF SSMVAPVPNN 240 FSQGYSNSMP VPPLQHNYPN FGTTTRPLIG ISSNPNGLIL GMGVQNNTSV QSSMPETTTC 300 SRNTGSDFMN TTSSDDADNY VVNHGLSRGN SGLLEDLLEE SQALTRAEKI EENCPIENEA 360 SKGKLVWEEY GLSEEAEDII LTEESTFSFA QEGGDNATPN KHSEDSSSLN SSSGITTKEG 420 TLELANQVDE DIMRFLDNFP VGVPVPDWYN DENDEQNTSN GQSFECDQIQ SHCSKSG

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MAPDGGGLKA RNNGGTRQVL KKGPWTATED AILMEYVKKN GEGNWNAVQR NSGLMRCGKS  60
CRLRWANHLR PNLKKGAFSL EEERLIVELH AKLGNKWARM AAQMPGRTDN EIKNYWNTRL  120
KRRQRAGLPI YPQDIQPQLN QQENQLQHST IPSPFDNNPQ NSNYVNNPPL SLLDIFNPST  180
MKPSMSDQYQ FNNPSPYLTT TNNNNKLKLF RDPRVSLSLT LASSIRNSQF SSMVAPVPNN  240
FSQGYSNSMP VPPLQHNYPN FGTTTRPLIG ISSNPNGLIL GMGVQNNTSV QSSMPETTTC  300
SRNTGSDFMN TTSSDDADNY VVNHGLSRGN SGLLEDLLEE SQALTRAEKI EENCPIENEA  360
SKGKLVWEEY GLSEEAEDII LTEESTFSFA QEGGDNATPN KHSEDSSSLN SSSGITTKEG  420
TLELANQVDE DIMRFLDNFP VGVPVPDWYN DENDEQNTSN GQSFECDQIQ SHCSKSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	3e-68	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT35343