PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35366
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 339aa    MW: 39175.9 Da    PI: 9.1816
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35366genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.8e-39972472131
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...eaesssssasns 85 
                +kkdrhski T++g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k  ikel ++              s ss sec   +  ++s s++++
  OIT35366  97 VAKKDRHSKINTAKGPRDRRIRLSIDIARSFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKSrlnklrcstvmganSESSTSECevvSGIDESPSDQKE 197
               579************************************************************************98755556788666444444444444 PP

       TCP  86 ssg....kaaksaakskksqksaasalnlakesrakarararertrekmr 131
               +++    +++k+++k++ks ++aa  + +akesr++ar+rarert+ k++
  OIT35366 198 NAKgnscNKEKKKKKKEKSVRRAAFYHPFAKESRKQARERARERTKLKKN 247
               4446677888888899999999999********************98865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MYNSSNYSCN YNPIFSSNIF NIPSPCIQYE HELFFQYYHD HLQQNLDDTL AEISTETAII  60
NTADSNKDDT IISRNELEQE QEARKNKKGK VSSNKRVAKK DRHSKINTAK GPRDRRIRLS  120
IDIARSFFNL QDMLRFEKAS KTLEWLLIKS KSDIKELSKS RLNKLRCSTV MGANSESSTS  180
ECEVVSGIDE SPSDQKENAK GNSCNKEKKK KKKEKSVRRA AFYHPFAKES RKQARERARE  240
RTKLKKNFCE SHHLNLRSWS FSERCEESAG YTSMNHLCQE MQAEVEELTS HNEKQLILGT  300
KENIANDCNL VATGNWSPNA IFNYQQNAGI PHEVNFRLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-24TCP family protein