PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35488
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 228aa    MW: 26164.6 Da    PI: 5.272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35488genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.9e-1078125454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++  rEr RR+++N++f+eL ++l +    +  K +K++iL  A++ +++L
  OIT35488  78 SKACRERIRREKLNERFSELCSVLEPG---RPVKTDKMAILGDAIRVLNEL 125
               6789**********************8...89**************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MDQLDSFRDN SWDLIDINSF IDEAPSDFFW NHQIQNQNQK AVAALEAPLS SATFQEECIE  60
TECPRKRGRN ESCSKQGSKA CRERIRREKL NERFSELCSV LEPGRPVKTD KMAILGDAIR  120
VLNELKTESE EYKEMNQKLM EEIKTLKAEK NELREEKLAL KAEKERMEQE LKATATPASF  180
IPPHPAAYQP AVNKMAVFPS YGYVPMWQYL PPSSRDTSQD HALRPPAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.21e-59bHLH family protein