PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35811

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 345aa MW: 39061.4 Da PI: 4.3223

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35811	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.3e-19	53	106	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k OIT35811 53 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 106 56689************************************************9 PP
2	HD-ZIP_I/II	130.1	8.6e-42	52	144	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++dalk++ e+L++++e+L +e++e OIT35811 52 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKHNYESLKHDNEALLKEIRE 144 69*************************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MKRPCSSDSL GALMSMCPNT TDEQNHVYST RDFQSMLLDE EGCIEESGHI SEKKRRLSVE 60 QVKALEKNFE VENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL ERDYGVLKAN 120 FDALKHNYES LKHDNEALLK EIRELKAKVY TENGESKGVA VKEEAMESES DDNKLIEQSK 180 PNDNDNNNNN NFLENFEEED EEEEINFENF NVAAAAAAST NIFGDNFKDG SSDSDSSAIL 240 NEDNSPNAAA ISSSGAFLIS TNGGSGSSKS SDSLNFCFQF TESSSKSNLG DGQKGNNNYY 300 QPQQYVKMEE HNFFNGEESC STLFTDEQAP TLQWYCPEDW NWKES

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MKRPCSSDSL GALMSMCPNT TDEQNHVYST RDFQSMLLDE EGCIEESGHI SEKKRRLSVE  60
QVKALEKNFE VENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL ERDYGVLKAN  120
FDALKHNYES LKHDNEALLK EIRELKAKVY TENGESKGVA VKEEAMESES DDNKLIEQSK  180
PNDNDNNNNN NFLENFEEED EEEEINFENF NVAAAAAAST NIFGDNFKDG SSDSDSSAIL  240
NEDNSPNAAA ISSSGAFLIS TNGGSGSSKS SDSLNFCFQF TESSSKSNLG DGQKGNNNYY  300
QPQQYVKMEE HNFFNGEESC STLFTDEQAP TLQWYCPEDW NWKES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	82	KKRRLSVEQVKALEKNFEVENKLEPERKVK
2	101	109	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-65	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT35811