PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35846

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 498aa MW: 55325.8 Da PI: 8.7158

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35846	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OIT35846 93 FVCEICSKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	11.6	0.00089	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ OIT35846 169 WKCDKCSKIYAVQSDWKAHSKTC 191 58*****************9998 PP
3	zf-C2H2	12.6	0.00042	199	217	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsrk+++++H + OIT35846 199 DCGTVFSRKDSFVTHRAFC 217 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MNQEKQMYHQ TNSGCFSLLE SSSVLSHQAA MFSDEASVSS TTRVPNLSPM PQSISNHQQP 60 QKIKKKRSLP GNPDPDAEVI ALSPKTLLAT NRFVCEICSK GFQRDQNLQL HRRGHNLPWK 120 LKQRNNKENR KKAYVCPEPT CVHHHPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV 180 QSDWKAHSKT CGTREYRCDC GTVFSRKDSF VTHRAFCDAL AEESARLSAN SALMHRAAVA 240 STTIPNSAAA TTESNFHFNQ SSPILFPFPT TNQRHFANPP PPPATVVTTH ISLNNPWDPQ 300 IPLNPNPTHH EENHNQMIHH PVPIKTESIH IPVSSSVPAF YQDHFFHKGS FSIPSPQLSA 360 TALLQKAATI GTTHSAVSHV NSTMAHLNRT SLGHVTHKIS PEDFLGFGSD NMSSTWQQKS 420 ENLTRDFLGL TGDHNHEESS ASGNGRNANG LLLSYGGNEG MDFQQTLYER DHSSVLKHHQ 480 LGFGFAAAET ASETWGNC

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MNQEKQMYHQ TNSGCFSLLE SSSVLSHQAA MFSDEASVSS TTRVPNLSPM PQSISNHQQP  60
QKIKKKRSLP GNPDPDAEVI ALSPKTLLAT NRFVCEICSK GFQRDQNLQL HRRGHNLPWK  120
LKQRNNKENR KKAYVCPEPT CVHHHPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV  180
QSDWKAHSKT CGTREYRCDC GTVFSRKDSF VTHRAFCDAL AEESARLSAN SALMHRAAVA  240
STTIPNSAAA TTESNFHFNQ SSPILFPFPT TNQRHFANPP PPPATVVTTH ISLNNPWDPQ  300
IPLNPNPTHH EENHNQMIHH PVPIKTESIH IPVSSSVPAF YQDHFFHKGS FSIPSPQLSA  360
TALLQKAATI GTTHSAVSHV NSTMAHLNRT SLGHVTHKIS PEDFLGFGSD NMSSTWQQKS  420
ENLTRDFLGL TGDHNHEESS ASGNGRNANG LLLSYGGNEG MDFQQTLYER DHSSVLKHHQ  480
LGFGFAAAET ASETWGNC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	132	KLKQRNNKENRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT35846