PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35863
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 244aa    MW: 28692 Da    PI: 7.7819
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35863genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-075496447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     W+  +   +++a++++G ++ k+Ia++m  g+t+++++ +   +
         OIT35863 54 WSRRDFNAFIRACEKYGRNDIKSIAAEME-GKTEEEVVRYAKVF 96
                     77777789*********************.*******9987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MPRDFPGFLL LTSSCKNQLK DTIEVEEPED VGEPLTAEEQ EEKEKLLEEG FSTWSRRDFN  60
AFIRACEKYG RNDIKSIAAE MEGKTEEEVV RYAKVFKERY KELNDYVRII KNIERGEARI  120
SRKDEIMKAI GKKLDRYNNP WLELKIQYGQ NKGKLHNEEC DRFMVTGPKL LGLNLILSLF  180
KIYIWRSFAV CTVHKLGYGN WDELKAAFRT SPLFRFDWFV KSRTTQELAR RCDAGLICLH  240
LMEV