PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35971

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 300aa MW: 34171.6 Da PI: 8.8784

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35971	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131	4.1e-41	169	246	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ OIT35971 169 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKNQQ 246 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MLEYDWGEQS SVMLSGEEAN QGNDQNHHHF FDPFANTSHQ TFTENPSLLN PQQHHFLNTT 60 HHQQQNHQFF HPHLNNTTLY DPRAYETTYN PTQGTMPSLH QQPHTGFIMV PKSEPQFMGG 120 VRDFASTSRI GLNLGGRTYF SSSEDDFVNR LYRRTRAVVE GGSVVNTPRC QAEGCNADLT 180 HAKHYHRRHK VCEFHSKAAT VIAAGLTQRF CQQCSRFHLL SEFDNGKRSC RKRLADHNRR 240 RRKNQQANIE NSNKSQLDST RNSSSDSLAR SPPDSGAHSS SVTVAISPPR ISLDCFRQRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-81	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT35971