PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36087

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 404aa MW: 45215 Da PI: 8.4855

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36087	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	56	76	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r H OIT36087 56 CHVCNKGFSSGKALGGHMRIH 76 *******************99 PP
2	zf-C2H2	14.3	0.00012	119	138	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk F++ +L H+r OIT36087 119 TCSICGKNFPSMKSLFGHMR 138 6******************8 PP
3	zf-C2H2	12.4	0.00048	298	320	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C ksF +++ L H ++H OIT36087 298 YKCNTCEKSFATHHALGGHRSSH 320 9***************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MVDYQDHRVG NETQLWIKLK ISEKDVLKDQ KQVPVEDHEY DEEEVQIPKN NFRRICHVCN 60 KGFSSGKALG GHMRIHVQAA KKLLSAKKGK RLVHKKRILD LHGQLVDFDN YNNQLPPPTC 120 SICGKNFPSM KSLFGHMRCH PERAWRGIQP PVNKNTTCLS SSDEKTASAS ASGEDLSKSV 180 PGWSVTAKRG RKPIVDDKEQ LNDAVHHLML LANGNSLESG LTGDRCYYNK HGIPEELEIT 240 NSINSVTSKT EAHEELASDH VNEKRRKKVK LRFLGDAVSP VRLANDQNPG IVTLPEKYKC 300 NTCEKSFATH HALGGHRSSH NKFRMVIQNS NVGTMASSMI DPVNEAAASS SKNGNKNFTP 360 IGPSSSQLTS PGEVSGRRIL DFDLNELPPH EEEDVEYFQF FQFN

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MVDYQDHRVG NETQLWIKLK ISEKDVLKDQ KQVPVEDHEY DEEEVQIPKN NFRRICHVCN  60
KGFSSGKALG GHMRIHVQAA KKLLSAKKGK RLVHKKRILD LHGQLVDFDN YNNQLPPPTC  120
SICGKNFPSM KSLFGHMRCH PERAWRGIQP PVNKNTTCLS SSDEKTASAS ASGEDLSKSV  180
PGWSVTAKRG RKPIVDDKEQ LNDAVHHLML LANGNSLESG LTGDRCYYNK HGIPEELEIT  240
NSINSVTSKT EAHEELASDH VNEKRRKKVK LRFLGDAVSP VRLANDQNPG IVTLPEKYKC  300
NTCEKSFATH HALGGHRSSH NKFRMVIQNS NVGTMASSMI DPVNEAAASS SKNGNKNFTP  360
IGPSSSQLTS PGEVSGRRIL DFDLNELPPH EEEDVEYFQF FQFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	3e-22	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT36087