PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36226

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 360aa MW: 40741.2 Da PI: 8.4082

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36226	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++G g+W++ +++ g++R++k+c++rw +yl OIT36226 14 KGPWTPEEDQKLMAFIEKYGCGSWRALPAKAGLKRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.6	5.8e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l OIT36226 67 RGKFSLEEEQTIIQLHALLGNR-WSAIAAHLP-NRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLMAFIE KYGCGSWRAL PAKAGLKRCG KSCRLRWINY 60 LRPDIKRGKF SLEEEQTIIQ LHALLGNRWS AIAAHLPNRT DNEIKNYWNT HLKKRLTKMG 120 IDPTTHKPKT NIFGKDAANL SHMAQWENAR LEAEARLVRE SKKQIISNQF GPNLATKPIS 180 HGNLQRNILP LQTKIPPCLD VLKAWQGTNW ITKPKTKDMT SSVFDPFFDS PTSTSNLSNN 240 NLFMVPNNNI PGLVDVNSCL VGESIFMENT KEEVQTEWKC FDKPNNELLS QINDISYSND 300 SSTYNMSILH QSSSGLIQGF THLENIVGSC QDNLEDDNNN NNYWNTILNS CTLPADSPVF

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLMAFIE KYGCGSWRAL PAKAGLKRCG KSCRLRWINY  60
LRPDIKRGKF SLEEEQTIIQ LHALLGNRWS AIAAHLPNRT DNEIKNYWNT HLKKRLTKMG  120
IDPTTHKPKT NIFGKDAANL SHMAQWENAR LEAEARLVRE SKKQIISNQF GPNLATKPIS  180
HGNLQRNILP LQTKIPPCLD VLKAWQGTNW ITKPKTKDMT SSVFDPFFDS PTSTSNLSNN  240
NLFMVPNNNI PGLVDVNSCL VGESIFMENT KEEVQTEWKC FDKPNNELLS QINDISYSND  300
SSTYNMSILH QSSSGLIQGF THLENIVGSC QDNLEDDNNN NNYWNTILNS CTLPADSPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	7e-99	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT36226