PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36239
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 161aa    MW: 18270.5 Da    PI: 7.9283
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36239genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.71.9e-5424119297
     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
               +eqdr+lPianv+rimk++lP+nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf++y+ep+k yl++yre egek
  OIT36239  24 KEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGSLGFDNYAEPFKRYLHRYRESEGEK 119
               89*******************************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MVDNINILGS IPKYNSISEE GGIKEQDRLL PIANVGRIMK QILPQNAKIS KEAKETMQEC  60
VSEFISFVTG EASDKCHKEK RKTVNGDDIC WALGSLGFDN YAEPFKRYLH RYRESEGEKA  120
NQNKAATGNN NTEEREKDEP QRKSTVLPTQ CRNLQGRFYG P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-61NF-YB family protein