PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36340

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 380aa MW: 44045.5 Da PI: 8.4312

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36340	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.7e-06	73	93	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg sF + +Lk+H+++H OIT36340 73 CEECGVSFQKPAHLKQHMQSH 93 *******************99 PP
2	zf-C2H2	17.9	8.4e-06	99	123	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC s++rk++L+rH+ H OIT36340 99 FVCHidDCQSSYRRKDHLTRHLLQH 123 89*******************9887 PP
3	zf-C2H2	14.3	0.00012	128	153	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C++ Fs + n++rH + H OIT36340 128 FECPvdGCKRAFSIQGNMTRHVKEmH 153 89********************9988 PP
4	zf-C2H2	19.2	3.3e-06	167	191	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s Lk+H +H OIT36340 167 YVCSepGCGKVFKFASKLKKHEDSH 191 89*******************9888 PP
5	zf-C2H2	16.2	3.1e-05	258	282	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ +C +Fs+ksnL +H + H OIT36340 258 KCEfqHCQHTFSTKSNLIQHVKAvH 282 79999***************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MAAKILGEMG EEKREVIFRD IRRYYCEFCG ICRSKKSLIS SHILSNHHDE MERRKDEANE 60 DVKKKEGPKI NICEECGVSF QKPAHLKQHM QSHSLERPFV CHIDDCQSSY RRKDHLTRHL 120 LQHQGKLFEC PVDGCKRAFS IQGNMTRHVK EMHDQRASPE ANLPKQYVCS EPGCGKVFKF 180 ASKLKKHEDS HVKLEKMEAL CLEPGCMKHF TNEKCLKEHI ESCHQHIVCE ICGTKQLKKN 240 IKRHLQTHEE ESTSERIKCE FQHCQHTFST KSNLIQHVKA VHLGDKPFSC GIAGCGMKFA 300 FKHVRDRHEK SGCHVYTPGD FVEADEQFRS RPRGGRKRKL PVFEAIMRKR ITPPCGTDPV 360 FYQGSEYLSW LLSAESDEEL

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MAAKILGEMG EEKREVIFRD IRRYYCEFCG ICRSKKSLIS SHILSNHHDE MERRKDEANE  60
DVKKKEGPKI NICEECGVSF QKPAHLKQHM QSHSLERPFV CHIDDCQSSY RRKDHLTRHL  120
LQHQGKLFEC PVDGCKRAFS IQGNMTRHVK EMHDQRASPE ANLPKQYVCS EPGCGKVFKF  180
ASKLKKHEDS HVKLEKMEAL CLEPGCMKHF TNEKCLKEHI ESCHQHIVCE ICGTKQLKKN  240
IKRHLQTHEE ESTSERIKCE FQHCQHTFST KSNLIQHVKA VHLGDKPFSC GIAGCGMKFA  300
FKHVRDRHEK SGCHVYTPGD FVEADEQFRS RPRGGRKRKL PVFEAIMRKR ITPPCGTDPV  360
FYQGSEYLSW LLSAESDEEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	339	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-133	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT36340