PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36494
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 230aa    MW: 26510.1 Da    PI: 8.6084
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36494genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.42.8e-1931116290
      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                Yn+YA   GF vrk +++++ rn+e t+  f Cs+eg++   ++  ++++ +r e r+gC a++k k + +g+wev +++ eHnH+++
  OIT36494  31 AYNSYAVAKGFGVRKGAKTYN-RNKELTRCLFLCSCEGQSPLCSDY-QEKKCQRLEYRCGCMARIKFKIS-NGVWEVFEFSDEHNHSMV 116
               5****************9998.7888***************99999.99999****************99.***************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
SKLVHNVINI DNDFAFRIGR KLCSENESYE AYNSYAVAKG FGVRKGAKTY NRNKELTRCL  60
FLCSCEGQSP LCSDYQEKKC QRLEYRCGCM ARIKFKISNG VWEVFEFSDE HNHSMVKKNL  120
RHFISSGRRI TDATKDILSS MVDAGIRTKK AVRYLQKEAG GIENAGFIEQ DAHSFIQARK  180
RSMINCGDAQ TLLNHFMHMQ SEDSNFFYSF QVDEDGRMCN FFCRDSISKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-23FAR1 family protein