PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36542

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 210aa MW: 24239.3 Da PI: 5.5007

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36542	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.3e-20	52	104	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k OIT36542 52 KRKLSDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWK 104 45899***********************************************9 PP
2	HD-ZIP_I/II	121.7	3.7e-39	51	142	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+ + e++rLe+ev +L+++l+e OIT36542 51 RKRKLSDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSDHDTNVVEKCRLESEVLKLKDQLSE 142 8****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MNPQVAADEM VLISQYYPDI YTQLVPQQGE TKPRRRRKKK QGEGSGSGVM RKRKLSDEQV 60 NLLEQSFGNE HKLESERKDK LASELGLDPR QVAVWFQNRR ARWKSKKLEE EYSKLKSDHD 120 TNVVEKCRLE SEVLKLKDQL SEAEKEIQRL LLERCDGVSS NNSPSTSSFS MEAAMEPPFL 180 GEFGMEGLDN VFYTPDNTYV QGLDWVNLYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	40	RRRRKKK
2	34	54	RRRRKKKQGEGSGSGVMRKRK
3	35	55	RRRRKKKQGEGSGSGVMRKRK
4	36	56	RRRRKKKQGEGSGSGVMRKRK
5	37	57	RRRRKKKQGEGSGSGVMRKRK
6	38	58	RRRRKKKQGEGSGSGVMRKRK
7	51	80	RKRKLSDEQVNLLEQSFGNEHKLESERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-68	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT36542