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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT36682 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 289aa MW: 33404 Da PI: 4.8587 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 62.8 | 5.2e-20 | 54 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ +q+++Le+ Fe +++++ e++ ++A++lgL+ rqV +WFqNrRa++k
OIT36682 54 KRRLKVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWK 106
557899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 124 | 7.2e-40 | 53 | 143 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
kkrrl+ +qv++LE+ Fe ++kL+perKv++a+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y++l+ + +++e+e+e L +elk
OIT36682 53 KKRRLKVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWKTKQLERDYNILKANYETLQLNYSKVEQEKEGLINELK 143
9*************************************************************************************99987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 289 aa Download sequence |
MKRFSFSDSS GKLLYPPEEK NRENLSYSTD FQAMLDGLED EDGIEESGCV TGKKRRLKVD 60 QVQALEKIFE VDNKLDPERK VKIAQELGLQ PRQVAIWFQN RRARWKTKQL ERDYNILKAN 120 YETLQLNYSK VEQEKEGLIN ELKGLKEKIG EENSTAFQRP QEILELNPRN YEVNNKLNSD 180 IVDSKDGSSD SDSSGVMNEE NYNNTLNYQP LMPKVSSYNA LDHLSLSSTT YTQLLDPRAS 240 STSSMRGYHQ QHQVGKMEEQ IGFTTEDSCN IYSVDQAPNL YWYLSDHRN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 53 | 58 | KKRRLK |
| 2 | 53 | 82 | KKRRLKVDQVQALEKIFEVDNKLDPERKVK |
| 3 | 101 | 109 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 3e-39 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT36682 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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