PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36866
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 257aa    MW: 28364.1 Da    PI: 6.3023
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36866genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.62.4e-55791821101
     NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
               ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdflvdivpr
  OIT36866  79 QLQTFWANQyqeIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 179
               89******99999**************************************************************************************** PP

     NF-YC  99 del 101
               ++l
  OIT36866 180 EDL 182
               987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MDHHGNGQPP GIGVVTSSAP IYGAPYQANQ MAGPSPAVSA GAIQSPQTAG LSASSAQMAQ  60
HQLAYQHIHQ QQQQQLQQQL QTFWANQYQE IEHVTDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVVFAR ACEMFILELT LRAWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE  180
DLKDEVLASI PRGTLPVGGP TEGLPFYYGM PPQSAPPVGA SGMYMGKPVD QALYAQQPRP  240
YMAQPIWPQQ QQPPSDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.34e-81NF-YC family protein