PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36953
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 29063.9 Da    PI: 9.8352
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36953genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krienk+ rqvtfskRr g+lKK +E+S+LCda+va+i+fs +gkl+eys+
  OIT36953  9 KRIENKISRQVTFSKRRSGLLKKTHEISILCDADVALIVFSAKGKLFEYST 59
              79***********************************************96 PP
2K-box965.8e-3276173299
     K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
               ++++ ++++++  e+++ e+ kL ++ie Lqr++Rh++GedL+s  l+e + LeqqL+++lk+iR++Kn+l++e+i++lqkkekelqe+n+ ++kkl+
  OIT36953  76 AERKLNANDSEPKENWTLEYPKLMSRIELLQRNIRHYMGEDLDSFGLREFHGLEQQLDTALKRIRTRKNQLMHESISQLQKKEKELQEQNHLMSKKLK 173
               5566777888889*******************************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTHEISILCD ADVALIVFSA KGKLFEYSTE  60
SSMESILERY ESYSYAERKL NANDSEPKEN WTLEYPKLMS RIELLQRNIR HYMGEDLDSF  120
GLREFHGLEQ QLDTALKRIR TRKNQLMHES ISQLQKKEKE LQEQNHLMSK KLKGNEKQQT  180
AHAQWGQSNP GQSSTPVILP QIPSQSPPHI PNLTIGGPFQ STEFTSTDEG QTRHGSNSLI  240
PPWMLHHLHN KG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-79MIKC_MADS family protein