PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36980
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 205aa    MW: 23518.9 Da    PI: 10.2939
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36980genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP94.11.3e-2963131378
               SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
       SBP   3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
               qv+gC++dls+ k+y++r kvCevhsk+++v+v+g+eqr       fh l efD++krsCr+rLa+hnerrrk+q+
  OIT36980  63 QVQGCSKDLSSSKDYNKRLKVCEVHSKTAKVIVNGIEQR-------FHLLAEFDDGKRSCRKRLAGHNERRRKPQT 131
               9************************************97.......7**************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MSRSVVESNC RDSPLIDLKL GRFPDQQHVQ SFKSPKIMTN LSLNVADKKM RTGGFKYQTP  60
YRQVQGCSKD LSSSKDYNKR LKVCEVHSKT AKVIVNGIEQ RFHLLAEFDD GKRSCRKRLA  120
GHNERRRKPQ TGSTGRFQGT SFSTSSSLCQ NILGSSILDQ PKYEMKDWYK NVNVEDAADY  180
SPRLTMPFTH KWTLTIKIPL YFIPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-34SBP family protein