PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37087

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 538aa MW: 59767.1 Da PI: 8.0397

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37087	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.4	6.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ OIT37087 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 **************66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDDLEDY 60 RVSRVKHMSL KNKEPKLLKR KQNHDNTEVR TPPDYNQGFL KGLDEDTSNR SSSGSAISNT 120 ESCAQFGSTE ASDLTGHAQS NIWDTTVPSR KRTCISRPKQ SSVEKLTKDL YTILHEQQSS 180 CFSGSSEEDL LFASDKPMVS VEIGHGSVLI RHPNSIGRDE ESEVSSLSVD NKRHYKAYSR 240 FSTPPANINK GVYLPNLGTE RIKKPTSQGM EQDKIKRDKD QLEKLQILGQ HNSPLCHIDL 300 KDVLNYDEFM RHFSSDEQQQ LLKYLAPVDS FAPPDSLKSM FESSHFEENL SSFQKLLAEG 360 VFDNSLGVKI EDSRTLKRLI LCYLTKSKWV EKYNLLKDTK CKSSTNGSEV AGGPNAIGTG 420 HSVNVKRPLE GHHAKYAGAK KAMKSPNRVV MKSSYEQKEL IDNDSSCFSP KSLFALPCNS 480 SPMLDSLHFA NGSSDQELLL DVPSNSSFPQ AELLVPTSSF AAQASTSSSS VYPHVVRP

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDDLEDY  60
RVSRVKHMSL KNKEPKLLKR KQNHDNTEVR TPPDYNQGFL KGLDEDTSNR SSSGSAISNT  120
ESCAQFGSTE ASDLTGHAQS NIWDTTVPSR KRTCISRPKQ SSVEKLTKDL YTILHEQQSS  180
CFSGSSEEDL LFASDKPMVS VEIGHGSVLI RHPNSIGRDE ESEVSSLSVD NKRHYKAYSR  240
FSTPPANINK GVYLPNLGTE RIKKPTSQGM EQDKIKRDKD QLEKLQILGQ HNSPLCHIDL  300
KDVLNYDEFM RHFSSDEQQQ LLKYLAPVDS FAPPDSLKSM FESSHFEENL SSFQKLLAEG  360
VFDNSLGVKI EDSRTLKRLI LCYLTKSKWV EKYNLLKDTK CKSSTNGSEV AGGPNAIGTG  420
HSVNVKRPLE GHHAKYAGAK KAMKSPNRVV MKSSYEQKEL IDNDSSCFSP KSLFALPCNS  480
SPMLDSLHFA NGSSDQELLL DVPSNSSFPQ AELLVPTSSF AAQASTSSSS VYPHVVRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-151	GATA family protein

Link Out ? help Back to Top
Ensembl	OIT37087