PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37108
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 138aa    MW: 15398.7 Da    PI: 10.395
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37108genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.91.1e-1815991497
     NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
               ++++ ++Pl r+kki+k d+d++++ aea  l++ + elf+  lt +s   a e+kr+t+k   +  av+r + + dfl+d  p
  OIT37108 15 GEVHQLQIPLGRVKKIMKLDQDINKVNAEALHLIASSTELFLEVLTEKSAQVALEKKRKTIKLEHLRVAVKRHQpTSDFLLDSLP 99
              678999****************************************************************9976489*****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MAGEDEEKNS TAAGGEVHQL QIPLGRVKKI MKLDQDINKV NAEALHLIAS STELFLEVLT  60
EKSAQVALEK KRKTIKLEHL RVAVKRHQPT SDFLLDSLPV PSQPSNPSPK IQNRPRLSTE  120
KPLPSGTRRI EAFFQKST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-47NF-YC family protein