PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37184
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 693aa    MW: 76792.6 Da    PI: 6.7336
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37184genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.41.1e-2970154187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW++qe+ aL+++r+em+  +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++   + +t+++f+qlea
  OIT37184  70 RWPRQETIALLKIRSEMDVVFRDSSLKGPLWEEVSRKMADLGFHRSAKKCKEKFENVYKYHKRTKDGRASK--ADGKTYRFFEQLEA 154
               8********************************************************************96..66678*******85 PP
2trihelix102.33.8e-32492577187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW+k ev aLi++r++++ +++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  OIT37184 492 RWPKAEVEALIKLRTQLDVKYQENGPKGPLWEEISAGMKKFGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 577
               8*********************************************************************8.99***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    
MLGVSGIISR TNSGGGGENP ESGGGAGSGG SSEIGIGGGG ISISGGFMTE EDRAIRNMEE  60
GERNSGGGNR WPRQETIALL KIRSEMDVVF RDSSLKGPLW EEVSRKMADL GFHRSAKKCK  120
EKFENVYKYH KRTKDGRASK ADGKTYRFFE QLEALENNPS SHHSLLLPPP ITSSRPPPPP  180
LEATPINMAM PMPSGNANTI NLQLPASQQQ GTTTVTVSSA PPNNSNIFVS SHQNTISHQN  240
IPLSSSMAPS PIPSPQPANN PINNLQPNTN FPSHDQNISA MSYSTSSSTS SDEDIQRRHK  300
KKRKWKDFFE RLMKDVIDKQ EDLQRRFLET LEKRERDRMV REEAWRVQEV ARMNREHDLL  360
VQERSMAAAK DAAVISFLQK ITEQQNIQIP SNINVAPPSA QVQIQLPENP PPPPTRSQVV  420
QQQTQPTAVL VSPAPPQPSP ATPAPISLPV TIPTPVSAQS LPLTPPVPAK NVELTPKSDN  480
GGEGYTPASS SRWPKAEVEA LIKLRTQLDV KYQENGPKGP LWEEISAGMK KFGYNRNAKR  540
CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLDALYK EKAKNETSSS SFSNPSASGF  600
ALNPENNPMM PIMARPEQQW PLPPHHQQPQ QHHESTRMDH DHESDNMDQD EDDEDEEDED  660
EENAYEIVAN KQQSSMAAAN TTTTTTATAT TTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296303QRRHKKKR
2296304QRRHKKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-58Trihelix family protein