PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37218

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 376aa MW: 43591.6 Da PI: 6.6087

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37218	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	165	211	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+t+ gR +kqc++rw+++l OIT37218 165 KGQWTIEEDRLLIQLVEKFGVRKWSQIAQTLK-GRIGKQCRERWHNHL 211 799**************************9.***********97 PP
2	Myb_DNA-binding	55.8	1e-17	219	259	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l+ a+++ G++ W+ Ia++++ gRt++++k++w+ OIT37218 219 LWTEEEDRILISAHAEVGNK-WSEIAKRIP-GRTENSIKNHWN 259 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MEFNQSSKQD FSIQPHNNED MNDVFCTLSK DYLHDFHHLD LSFSLPTFNN PDHNFMIETN 60 GYDPLFDPFS NIKDNYSPMD QDFNFNYEFK PFDQSGASGS TLVNFNVVPD ESSCVTTGDN 120 NGNYGQKEIG GRKNKKLIKS NENSLSSSSM RKQGRGRKKY SKSAKGQWTI EEDRLLIQLV 180 EKFGVRKWSQ IAQTLKGRIG KQCRERWHNH LRPDIKKDLW TEEEDRILIS AHAEVGNKWS 240 EIAKRIPGRT ENSIKNHWNA TKRRQFSRRK CRTKWPRPSS LLQNYIKSLN FEKGSNDTIL 300 NNNAPKLEPF ELCDKGNIQQ LVADYDFSQV PEFGLDDKLF DDLEIPYNEL PQLMQAGEVN 360 KEAELMDLIS SVNNEI

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MEFNQSSKQD FSIQPHNNED MNDVFCTLSK DYLHDFHHLD LSFSLPTFNN PDHNFMIETN  60
GYDPLFDPFS NIKDNYSPMD QDFNFNYEFK PFDQSGASGS TLVNFNVVPD ESSCVTTGDN  120
NGNYGQKEIG GRKNKKLIKS NENSLSSSSM RKQGRGRKKY SKSAKGQWTI EEDRLLIQLV  180
EKFGVRKWSQ IAQTLKGRIG KQCRERWHNH LRPDIKKDLW TEEEDRILIS AHAEVGNKWS  240
EIAKRIPGRT ENSIKNHWNA TKRRQFSRRK CRTKWPRPSS LLQNYIKSLN FEKGSNDTIL  300
NNNAPKLEPF ELCDKGNIQQ LVADYDFSQV PEFGLDDKLF DDLEIPYNEL PQLMQAGEVN  360
KEAELMDLIS SVNNEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	2e-74	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT37218