PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37394

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 212aa MW: 24635.4 Da PI: 7.2567

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37394	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.1	4.8e-09	25	68	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+l+ +a ++ + +W +Ia++++ g+t++++ ++ OIT37394 25 TWTRFEDKLFEQALVMYSENdveRWQKIANRVP-GKTAEDVMAHY 68 7******************************.******998 PP
2	Myb_DNA-binding	44.4	3.9e-14	121	165	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky OIT37394 121 PWTEEEHRLFLIGLDKYGKGDWRSISRNVVVTRTPTQVASHAQKY 165 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MMYTTNNRWM IGSDSTATMI HSNSTWTRFE DKLFEQALVM YSENDVERWQ KIANRVPGKT 60 AEDVMAHYDA LVHDVFEIDS GRVDPPSYPD DSFDWESDSK TSQISFGSNK KHEVERKKGT 120 PWTEEEHRLF LIGLDKYGKG DWRSISRNVV VTRTPTQVAS HAQKYYLRQQ SMKKERKRSS 180 IHDITTAVDT KTVPPQNTLQ NQGGYQNFNF PM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	3e-74	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT37394