PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37405
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 221aa    MW: 26332.6 Da    PI: 8.442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37405genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed++lv +vk++G ++W+  a+  g++Rt+k+c++rw +yl
         OIT37405  8 RGPWTEQEDLQLVFYVKLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 55
                     89********************************************97 PP
2Myb_DNA-binding54.92e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
         OIT37405  61 RGKMTPQEERLVLELHSKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVQEEIRRGP WTEQEDLQLV FYVKLFGDRR WDFLAKVSGL KRTGKSCRLR WVNYLNPDLK  60
RGKMTPQEER LVLELHSKWG NRWSRIARKI PGRTDNEIKN YWRTHMRKKA QEQRKKATSI  120
SPSSSFSNCS SSSSITREEN ERNFYDTGGI EQLQVEEQKK DNDQEQAGES MKVYSMDEIW  180
KDIELLEENE TINKSIMGSI SPLWDYCADP MWKDFDWSTF R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.16e-73MYB family protein