PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37584

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 382aa MW: 43569.6 Da PI: 6.3298

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37584	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.2	1.2e-24	77	158	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k++++ + s +++y +++e OIT37584 77 WVQEETRALISLRRELDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKHNQEP---NGSAKMSYHKEIE 158 ****************************************************************99886...5667888988887 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MSDKPPTSIS LYEEQESMDQ HSNHMIIEVA TPNAHLQQPQ QILLPGISGG DTTSSGGEDN 60 NNNNNLKLAP KKRAETWVQE ETRALISLRR ELDSLFNTSK SNKHLWDQIS LKMREKGFDR 120 SPTMCTDKWR NLLKEFKKAK HNQEPNGSAK MSYHKEIEEI LKARNKNYKN PTLKVDTFMQ 180 FSQKGLDDTS ITFGPVEENG RPTLNLERQL DHDGHPLAIT AADAVTASGS PWNWRETPGN 240 GEQSNSAEGR VISVKWGDYT KRIGIDGTAD AIKQAIKSAF RLRTERAFWL EDEQNIVRAL 300 DRDMPLGSYT LHVDEGLTIK VCMYEEADHL PVHTEDKTFY TTNDFRDFLS HRGWTCLREY 360 NGYRHVDMLD ELCPGAVYRG VN

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MSDKPPTSIS LYEEQESMDQ HSNHMIIEVA TPNAHLQQPQ QILLPGISGG DTTSSGGEDN  60
NNNNNLKLAP KKRAETWVQE ETRALISLRR ELDSLFNTSK SNKHLWDQIS LKMREKGFDR  120
SPTMCTDKWR NLLKEFKKAK HNQEPNGSAK MSYHKEIEEI LKARNKNYKN PTLKVDTFMQ  180
FSQKGLDDTS ITFGPVEENG RPTLNLERQL DHDGHPLAIT AADAVTASGS PWNWRETPGN  240
GEQSNSAEGR VISVKWGDYT KRIGIDGTAD AIKQAIKSAF RLRTERAFWL EDEQNIVRAL  300
DRDMPLGSYT LHVDEGLTIK VCMYEEADHL PVHTEDKTFY TTNDFRDFLS HRGWTCLREY  360
NGYRHVDMLD ELCPGAVYRG VN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-162	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT37584