PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37721

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 233aa MW: 26597.2 Da PI: 6.0708

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37721	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.4e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl++yss OIT37721 9 KKIDNVTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSS 59 68***********************************************96 PP
2	K-box	53.7	9e-19	91	173	18	100
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++a+L kei++ +++R++ Ge+L+ Ls++eLqqLe+ Le +l+++ +kK + ++++i++lq+k +l een++L++++ e OIT37721 91 NSDYARLTKEISQKSHQLRQMRGEELQGLSIEELQQLEKSLEAGLSRVIEKKGDKIMKEINQLQEKGIQLMEENERLKQQVRE 173 5689***************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MVKEKIQIKK IDNVTARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYSSS 60 SMKEILERHN LLSKNLHKLE QPSLELQLVE NSDYARLTKE ISQKSHQLRQ MRGEELQGLS 120 IEELQQLEKS LEAGLSRVIE KKGDKIMKEI NQLQEKGIQL MEENERLKQQ VREISINSSE 180 HPAIVVAVES ENIYYEERQS SESVNNASNS TSPPPLEDHS SDTFLKLGLP YPG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-115	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT37721