PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37727
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 339aa    MW: 38849.5 Da    PI: 5.4373
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37727genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28958150
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
  OIT37727  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
              68***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN  60
KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCETDR TYQAASPASV DSHIEEFQQE  120
ILKYKTQLEE TDRRLRMYEG DLCEITTVCE AQYREEILQE TLKQVQARKQ VLEETYNSPQ  180
AQTTTQPQMD FASQNVNVVN NAATSDSIPN TSSNTFMDWV PHSQRDPHVQ ILNFLDSNGL  240
LPFRDEADQR MENMLPPSLT QLHTPNVSAV TDHLSPNNRF ENDPQRPTSS FEGIIDVNNA  300
PWPPLYPTGN DPFPETQPRE RALLELFLSQ LTPVNRDHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-55MIKC_MADS family protein