PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37860
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 76aa    MW: 9108.78 Da    PI: 9.6585
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37860genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.87.7e-20351551
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE..EEEEE- CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk..lyeyss 51
              n+ +r+v +  R ++++KKAeELSvLCd+e+ +i+fs++ k  +ye++s
  OIT37860  3 NEHRRSVVLQERMETLFKKAEELSVLCDVEIGIIVFSPDKKnvVYEWPS 51
              899**********************************98654499*996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    
MVNEHRRSVV LQERMETLFK KAEELSVLCD VEIGIIVFSP DKKNVVYEWP SRDKFKQLLM  60
RYLDKPLVER LKKLTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-12M-type_MADS family protein