PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37861
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 162aa    MW: 19462 Da    PI: 10.1035
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37861genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-17350550
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE..EEEEE CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk..lyeys 50
              n+++r v +  R ++++KKAeELSvLCd+e+ +i+fs++ k   ye++
  OIT37861  3 NERRRLVVLQERMETLFKKAEELSVLCDVEIGIIVFSPDKKnaKYEWP 50
              899**********************************98761146665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MVNERRRLVV LQERMETLFK KAEELSVLCD VEIGIIVFSP DKKNAKYEWP SRDNFKQLLM  60
RYLDKPLVER LKKLTTNEMF LRKEMDAKMK KIDQQKTEEK EMEHLFSQLY LGENTVFDLD  120
KRQLIGVRNL AIKAKEKAVK RRIQLKYLHY QRLSLPIDCI SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.18e-12M-type_MADS family protein