PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38000

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 255aa MW: 27808.4 Da PI: 7.1927

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38000	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v q+G+++W++I+ ++ gR++k+c++rw + OIT38000 9 KGSWSPEEDAMLTKLVDQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 54 799***************************.*********985 PP
2	Myb_DNA-binding	55	1.9e-17	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ OIT38000 63 PFTPSEDAIILQAHAVHGNR-WATIARLLP-GRTDNAIKNHWNST 105 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MDGTSEKIKG SWSPEEDAML TKLVDQHGPR NWSLISTGIP GRSGKSCRLR WCNQLSPAVQ 60 HRPFTPSEDA IILQAHAVHG NRWATIARLL PGRTDNAIKN HWNSTLRRKR HAPEAPAAAT 120 MLMALDESRT GSSSESNSKR QCSRASQEQS SCGLDADDLG LNGPETSLTL SLPGGGLLQS 180 LAVDEGKVKD EVPPPINGDH KVKEEKCTVE MEETCLVTIM QRMIAHEVRC YIDKLRAQGG 240 LGIGLAFESD VPKQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-54	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT38000