PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38188
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14849.9 Da    PI: 8.9173
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38188genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74.2e-15854450
              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              + k+n+  t+  R++ i  K  ELS+LCd++ + ii s++g+l++++
  OIT38188  8 KKKTNNPKTYQVRKECIKRKTMELSTLCDIKCCTIITSPQGELQTWP 54
              57899*****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MAEENQNKKK TNNPKTYQVR KECIKRKTME LSTLCDIKCC TIITSPQGEL QTWPENLDAV  60
KEVLNLYSKT LSPNKKANKE SSSEEKEEEI DILTLVESKL DAVNNRIRYL ENKNAGFVSN  120
NKGKKQRIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.14e-10M-type_MADS family protein