PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38276

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 363aa MW: 41287 Da PI: 6.2382

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38276	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	290	324	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+ +gL+++q+ +WF N+R ++ OIT38276 290 KWPYPSESEKVALAETTGLDQKQINNWFINQRKRH 324 669*****************************885 PP
2	ELK	37.9	3.7e-13	244	265	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s OIT38276 244 ELKNHLLRKYSGYLSSLKQELS 265 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MENNYNQLGE NSAQRGNNFL YGGIPLLASP NSSIYGRSSG GGGGDCYDQS QAVVHPIVKT 60 EGGSTSHHHT FEYPSIMRSG YHHQTVQNHH ESESSGSEVD ALKAKIIAHP QCSNLLDAYM 120 DCQKVGAPPE VVARLSAVRQ EFEVRQRDSS TDRNVTKDPE LDQFMEAYYD MLVKYREELT 180 RPLHEAMDFM RKIETQLNML GNGPVRIFNS EDKCEGGGSS EEEQDNSGGE TEIPEIDPRA 240 EDRELKNHLL RKYSGYLSSL KQELSKKKKK GKLPKDARQK LLSWWELHYK WPYPSESEKV 300 ALAETTGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDGVH PQNAAALYME GHYMAEGPFR 360 LGQ

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MENNYNQLGE NSAQRGNNFL YGGIPLLASP NSSIYGRSSG GGGGDCYDQS QAVVHPIVKT  60
EGGSTSHHHT FEYPSIMRSG YHHQTVQNHH ESESSGSEVD ALKAKIIAHP QCSNLLDAYM  120
DCQKVGAPPE VVARLSAVRQ EFEVRQRDSS TDRNVTKDPE LDQFMEAYYD MLVKYREELT  180
RPLHEAMDFM RKIETQLNML GNGPVRIFNS EDKCEGGGSS EEEQDNSGGE TEIPEIDPRA  240
EDRELKNHLL RKYSGYLSSL KQELSKKKKK GKLPKDARQK LLSWWELHYK WPYPSESEKV  300
ALAETTGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDGVH PQNAAALYME GHYMAEGPFR  360
LGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-137	TALE family protein

Link Out ? help Back to Top
Ensembl	OIT38276