PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38319

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 235aa MW: 26526.8 Da PI: 4.9811

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38319	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.6	3.7e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+eyss OIT38319 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSS 59 68***********************************************96 PP
2	K-box	53.1	1.4e-18	92	173	19	100
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++L kei++ + +R++ Ge+L+ Ls++eLqqLe+ Le +l+++ ++K + ++++i++lq+k +l een++L+++++e OIT38319 92 SNYSRLSKEISEKSHRLRQMRGEELQGLSIEELQQLERSLEAGLTRVIERKGDKIMTEINQLQQKGMQLMEENERLKQQVME 173 6799***************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYSSS 60 SMKEILERRD LHSKNLEKLD QPSLELQLVE NSNYSRLSKE ISEKSHRLRQ MRGEELQGLS 120 IEELQQLERS LEAGLTRVIE RKGDKIMTEI NQLQQKGMQL MEENERLKQQ VMEISNNGYN 180 NPGAVLVAVE SENGYINEEG QSSESVTNAC NSTGPPPQDD DSSDTSLKLG LPYSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-116	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT38319