PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38363

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 26473.2 Da PI: 9.6562

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38363	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.4	7.7e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsst klyeyss OIT38363 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTSKLYEYSS 59 8***********************************************96 PP
2	K-box	85.2	1.4e-28	84	171	12	99
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ + +q+e+a L++++enLq+++R+++Ge+L+ L++k+Lq+Le+qLe sl+ +R +K+++l+++++el +k + ++en++L kkl+ OIT38363 84 SEVKFWQREAALLRQQLENLQENHRQMMGEELSGLNVKDLQNLEKQLEMSLRGVRMRKDQILIDEVQELTQKGNLSHQENMELYKKLD 171 67899********************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MGRGKIMIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TSKLYEYSST 60 SMKSVIERYN KAKEETHKLG DPISEVKFWQ REAALLRQQL ENLQENHRQM MGEELSGLNV 120 KDLQNLEKQL EMSLRGVRMR KDQILIDEVQ ELTQKGNLSH QENMELYKKL DLVRQENTEL 180 YKKVYGTRDA NAVSRNAMSS NSLRVNEDPH APLHLQLSQP QQQHYETP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-90	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT38363