PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38382
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18016.3 Da    PI: 5.601
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38382genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.49.3e-141864450
              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              e+     + f+k ++ i+K A+ELS+ ++aev ++ifs++gk y+y 
  OIT38382 18 ESMVEHLTAFAKTKAVIFKRAHELSITTGAEVGLLIFSPSGKPYTYG 64
              666677899************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MAKNKSLSRQ KAEIKALESM VEHLTAFAKT KAVIFKRAHE LSITTGAEVG LLIFSPSGKP  60
YTYGSPHNFN AIADRFLKQK LYDSENHYSD VVESNSNKEF ERLMIQKEKL EKLLDIIQEI  120
QNRSTTGNSI ALHPSSSEEH CVMNDLTVVG DLDDEETSAA D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-17M-type_MADS family protein