PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38439

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 226aa MW: 24951.9 Da PI: 8.4063

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38439	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.6	6.9e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+e OIT38439 13 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAKSE 112 7**********************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MSSSSSSLSS NSPCAACKFL RRKCQPECVF APYFPPDQPQ KFANVHKVFG ASNVTKLLNE 60 LQPHQREDAV NSLAYEADMR LRDPVYGCVG VISLLQHQLR QLQMDLSCAK SELSKYQNLG 120 GIAGTTTHGL LAAAAAAAAT TAHHHQQFNF MAGGGRDHHH LYHHHQFFPR DQSQQQQQQH 180 QHMIRAFEGH GNNNFDASSL LLGQLSQFQQ PRAAGGDGRR TPVDPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	3e-67	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT38439